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.. _sphx_glr_auto_examples:

.. _examples-index:

Examples
========

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.. _sphx_glr_auto_examples_tuto:

Tutorials
---------

**Phase-Amplitude Coupling tutorials**


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    <div class="sphx-glr-thumbcontainer" tooltip="In this example, we illustrate how to conduct a PAC analysis on real data. The data used here a...">

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    .. figure:: /auto_examples/tuto/images/thumb/sphx_glr_plot_real_data_thumb.png

        :ref:`sphx_glr_auto_examples_tuto_plot_real_data.py`

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    </div>


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   /auto_examples/tuto/plot_real_data
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    <div style='clear:both'></div>



.. _sphx_glr_auto_examples_pac:

Phase-Amplitude coupling
------------------------

**Measure Phase-Amplitude Coupling (PAC) on electrophysiological data**

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    <div class="sphx-glr-thumbcontainer" tooltip="Reproduced the figure in the README. ">

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    .. figure:: /auto_examples/pac/images/thumb/sphx_glr_plot_readme_thumb.png

        :ref:`sphx_glr_auto_examples_pac_plot_readme.py`

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    </div>


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   /auto_examples/pac/plot_readme

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    <div class="sphx-glr-thumbcontainer" tooltip="This script offers a comparison between all of the implemented PAC methods, in particular the m...">

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    .. figure:: /auto_examples/pac/images/thumb/sphx_glr_plot_pac_methods_thumb.png

        :ref:`sphx_glr_auto_examples_pac_plot_pac_methods.py`

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    </div>


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   /auto_examples/pac/plot_pac_methods

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    <div class="sphx-glr-thumbcontainer" tooltip="This example illustrates the different implemented methods in order to generate the distributio...">

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    .. figure:: /auto_examples/pac/images/thumb/sphx_glr_plot_compare_surrogates_thumb.png

        :ref:`sphx_glr_auto_examples_pac_plot_compare_surrogates.py`

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    </div>


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   /auto_examples/pac/plot_compare_surrogates

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    <div class="sphx-glr-thumbcontainer" tooltip="This example illustrates the effect of the different implemented normalizations. First, the tru...">

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    .. figure:: /auto_examples/pac/images/thumb/sphx_glr_plot_compare_normalizations_thumb.png

        :ref:`sphx_glr_auto_examples_pac_plot_compare_normalizations.py`

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    </div>


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   /auto_examples/pac/plot_compare_normalizations

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    <div class="sphx-glr-thumbcontainer" tooltip="Tensorpac provides two ways for extracting phase and amplitude :">

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    .. figure:: /auto_examples/pac/images/thumb/sphx_glr_plot_compare_filtering_thumb.png

        :ref:`sphx_glr_auto_examples_pac_plot_compare_filtering.py`

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    </div>


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   /auto_examples/pac/plot_compare_filtering

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    <div class="sphx-glr-thumbcontainer" tooltip="One thing you may have noticed, both the fit() and filterfit() methods take as inputs data and ...">

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    .. figure:: /auto_examples/pac/images/thumb/sphx_glr_plot_long_range_coupling_thumb.png

        :ref:`sphx_glr_auto_examples_pac_plot_long_range_coupling.py`

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    </div>


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   /auto_examples/pac/plot_long_range_coupling
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    <div style='clear:both'></div>



.. _sphx_glr_auto_examples_erpac:

Event-Related Phase-Amplitude coupling
--------------------------------------

**Measure Event-Related Phase-Amplitude Coupling (ERPAC) on electrophysiological data**

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    <div class="sphx-glr-thumbcontainer" tooltip="Event-Related Phase-Amplitude Coupling (ERPAC) do not measure PAC across time cycle but instead...">

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    .. figure:: /auto_examples/erpac/images/thumb/sphx_glr_plot_erpac_stats_thumb.png

        :ref:`sphx_glr_auto_examples_erpac_plot_erpac_stats.py`

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    </div>


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   /auto_examples/erpac/plot_erpac_stats

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    <div class="sphx-glr-thumbcontainer" tooltip="Event-Related Phase-Amplitude Coupling (ERPAC) do not measure PAC across time cycle but instead...">

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    .. figure:: /auto_examples/erpac/images/thumb/sphx_glr_plot_erpac_thumb.png

        :ref:`sphx_glr_auto_examples_erpac_plot_erpac.py`

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    </div>


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   /auto_examples/erpac/plot_erpac
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    <div style='clear:both'></div>



.. _sphx_glr_auto_examples_stats:

Statistics
----------

**Statistically based examples**


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    <div class="sphx-glr-thumbcontainer" tooltip="This script illustrates three methods to correct the p-values for multiple comparisons (i.e by ...">

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    .. figure:: /auto_examples/stats/images/thumb/sphx_glr_plot_compare_mcp_thumb.png

        :ref:`sphx_glr_auto_examples_stats_plot_compare_mcp.py`

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    </div>


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   /auto_examples/stats/plot_compare_mcp

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    <div class="sphx-glr-thumbcontainer" tooltip="This example illustrates how to identify stationary time-series (i.e. time-series with constant...">

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    .. figure:: /auto_examples/stats/images/thumb/sphx_glr_plot_stats_stationary_thumb.png

        :ref:`sphx_glr_auto_examples_stats_plot_stats_stationary.py`

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    </div>


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   /auto_examples/stats/plot_stats_stationary

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    <div class="sphx-glr-thumbcontainer" tooltip="This example illustrates how to compute and plot the p-values. To this end, Tensorpac uses perm...">

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    .. figure:: /auto_examples/stats/images/thumb/sphx_glr_plot_pvalues_thumb.png

        :ref:`sphx_glr_auto_examples_stats_plot_pvalues.py`

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    </div>


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   /auto_examples/stats/plot_pvalues

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    <div class="sphx-glr-thumbcontainer" tooltip="This example illustrates how to statistically compare the phase-amplitude coupling results comi...">

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    .. figure:: /auto_examples/stats/images/thumb/sphx_glr_plot_compare_cond_cluster_thumb.png

        :ref:`sphx_glr_auto_examples_stats_plot_compare_cond_cluster.py`

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    </div>


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   /auto_examples/stats/plot_compare_cond_cluster
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    <div style='clear:both'></div>



.. _sphx_glr_auto_examples_misc:

Miscellaneous
-------------

**Miscellaneous examples**


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    <div class="sphx-glr-thumbcontainer" tooltip="This example illustrate how to compute and plot the Power Spectrum Density (PSD) of an electrop...">

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    .. figure:: /auto_examples/misc/images/thumb/sphx_glr_plot_psd_thumb.png

        :ref:`sphx_glr_auto_examples_misc_plot_psd.py`

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    </div>


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   /auto_examples/misc/plot_psd

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    <div class="sphx-glr-thumbcontainer" tooltip="Instead of looking for phase and amplitude frequency pairs (as in a comodulogram) this example ...">

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    .. figure:: /auto_examples/misc/images/thumb/sphx_glr_plot_fmin_fmax_optmization_thumb.png

        :ref:`sphx_glr_auto_examples_misc_plot_fmin_fmax_optmization.py`

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   /auto_examples/misc/plot_fmin_fmax_optmization

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    <div class="sphx-glr-thumbcontainer" tooltip="This example illustrate how to bin the amplitude according to the phase. ">

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    .. figure:: /auto_examples/misc/images/thumb/sphx_glr_plot_binned_amplitude_thumb.png

        :ref:`sphx_glr_auto_examples_misc_plot_binned_amplitude.py`

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    </div>


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   /auto_examples/misc/plot_binned_amplitude

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    <div class="sphx-glr-thumbcontainer" tooltip="This example illustrates how to realign time-frequency representations according to a phase. In...">

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    .. figure:: /auto_examples/misc/images/thumb/sphx_glr_plot_align_tf_pha_peak_thumb.png

        :ref:`sphx_glr_auto_examples_misc_plot_align_tf_pha_peak.py`

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   /auto_examples/misc/plot_align_tf_pha_peak

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    <div class="sphx-glr-thumbcontainer" tooltip="In Tensorpac, you can define your phase and amplitude vectors in sevral ways :">

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    .. figure:: /auto_examples/misc/images/thumb/sphx_glr_plot_frequency_vectors_thumb.png

        :ref:`sphx_glr_auto_examples_misc_plot_frequency_vectors.py`

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    </div>


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   /auto_examples/misc/plot_frequency_vectors

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    <div class="sphx-glr-thumbcontainer" tooltip="This example illustrate how to compute and plot the Inter-Trial Coherence (ITC). The ITC can be...">

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    .. figure:: /auto_examples/misc/images/thumb/sphx_glr_plot_itc_thumb.png

        :ref:`sphx_glr_auto_examples_misc_plot_itc.py`

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    </div>


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   /auto_examples/misc/plot_itc

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    <div class="sphx-glr-thumbcontainer" tooltip="Use the pac_signals_tort function to generate artificial PAC. ">

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    .. figure:: /auto_examples/misc/images/thumb/sphx_glr_plot_artificially_coupled_signals_thumb.png

        :ref:`sphx_glr_auto_examples_misc_plot_artificially_coupled_signals.py`

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    </div>


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   /auto_examples/misc/plot_artificially_coupled_signals

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    <div class="sphx-glr-thumbcontainer" tooltip="First, the amplitude is binned according to phase slices (360 degrees/nbins). Then, the PP is d...">

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    .. figure:: /auto_examples/misc/images/thumb/sphx_glr_plot_preferred_phase_thumb.png

        :ref:`sphx_glr_auto_examples_misc_plot_preferred_phase.py`

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   /auto_examples/misc/plot_preferred_phase
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    <div style='clear:both'></div>



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 .. container:: sphx-glr-footer
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  .. container:: sphx-glr-download

    :download:`Download all examples in Python source code: auto_examples_python.zip <//home/circleci/project/docs/source/auto_examples/auto_examples_python.zip>`



  .. container:: sphx-glr-download

    :download:`Download all examples in Jupyter notebooks: auto_examples_jupyter.zip <//home/circleci/project/docs/source/auto_examples/auto_examples_jupyter.zip>`


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 .. rst-class:: sphx-glr-signature

    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_